Blar i NTNU Open på forfatter "Martyushenko, Nikolay"
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A song of Host and Virus: Studying Phage Plaque Development on Bacterial Lawns
Todal, Aslak (Master thesis, 2020)I denne masteroppgaven presenteres nye metoder, utstyr og en matematisk modell for undersøkelse av utviklingen av bakteriofagplakk i semisolid agar fylt med bakterier. Cellfiebooth-systemet, opprinnelig utviklet og introdusert ... -
Containing pandemics through targeted testing of households
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind (Peer reviewed; Journal article, 2021)Background While invasive social distancing measures have proven efficient to control the spread of pandemics failing wide-scale deployment of vaccines, they carry vast societal costs. The development of a diagnostic ... -
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models
Martyushenko, Nikolay; Almaas, Eivind (Journal article; Peer reviewed, 2019)Motivation: The number and complexity of genome-scale metabolic models is steadily increasing, empowered by automated model-generation algorithms. The quality control of the models, however, has always remained a significant ... -
Host range expansion of phage cocktails: automation and study of Appelmans protocol
Dougherty, Peter Erdmann (Master thesis, 2021)Imens antibiotikaresistens sprer seg globalt, har bakteriofager fått fornyet oppmerksomhet som alternativ behandlingsmåte for bakterielle infeksjoner. Dette prosjektet tar for seg to aspekter i utviklingen av bakteriofager ... -
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind (Peer reviewed; Journal article, 2016)Background Genetic switches are ubiquitous in nature, frequently associated with the control of cellular functions and developmental programs. In the realm of synthetic biology, it is of great interest to engineer genetic ... -
Methods and algorithms for the study of biomolecular networks
Martyushenko, Nikolay (Doctoral theses at NTNU;2019:179, Doctoral thesis, 2019)Living organisms play a crucial role in our lives, serving us as sources of food and materials. In order to effectively work with living organisms, we need to understand them. And we understand biological organisms by ... -
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions
Martyushenko, Nikolay; Almaas, Eivind (Journal article; Peer reviewed, 2019)Background Genome-scale metabolic network reconstructions are low level chemical representations of biological organisms. These models allow the system-level investigation of metabolic phenotypes using a variety of ...